PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj2g3v1058120.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ZF-HD
Protein Properties Length: 208aa    MW: 22328 Da    PI: 8.773
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj2g3v1058120.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer106.51.6e-3364121359
      ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                      +v+YkeClkNh aslGgha+DGCgEfmps++++  +++++kCaACgCHRnFHRre+ee
  Lj2g3v1058120.1  64 TVTYKECLKNHVASLGGHALDGCGEFMPSPTATaDDPSSIKCAACGCHRNFHRREPEE 121
                      699***************************999889******************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047705.0E-2865119IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257745.0E-2365118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.3E-3066118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.5467118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MEVLTTATNN ITSTAKSPEP ETETPTRIQQ PGNVNATAKP LSFSNGVLKR HHPPAPHANH  60
SPVTVTYKEC LKNHVASLGG HALDGCGEFM PSPTATADDP SSIKCAACGC HRNFHRREPE  120
EPPITAAHHV FEYQPHHRHH PPPPVPFNRS PNSASPPPIS SYPSAPHMLL ALSGAGLPVP  180
PENTAAPTQT PGSDSRKRFR TKFTPGQK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.128441e-120cell culture
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0105710.0AP010571.1 Lotus japonicus genomic DNA, clone: LjT17J13, TM1835, complete sequence.
GenBankAP0105720.0AP010572.1 Lotus japonicus genomic DNA, clone: LjT38M11, TM1877, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004491795.11e-69PREDICTED: zinc-finger homeodomain protein 9
TrEMBLV7BZ756e-68V7BZ75_PHAVU; Uncharacterized protein
STRINGGLYMA13G05420.15e-66(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.17e-42homeobox protein 30